PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023022.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 256aa    MW: 28162.8 Da    PI: 5.7938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023022.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-1589135354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er+RRdr+N +f  Lr  +P        +++Ka+iLe Av YI++L
  Do023022.1  89 MSHVEAERQRRDRLNRRFCDLRAAVPRV-----SRMDKASILEDAVSYISEL 135
                 68*************************5.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2486135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1789155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-489140No hitNo description
PfamPF000105.8E-1389135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1690152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1492141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDEFVWPAAS CGPLFPESCF SAVSHHQRPA LEFMPCHDVP EQWLLGDDVL DKHDNEEELQ  60
DGRAIQTPPA PLVERSRRKP GPRTDGSAMS HVEAERQRRD RLNRRFCDLR AAVPRVSRMD  120
KASILEDAVS YISELRGRVE QLEEAAAEAR RMTTASPLAH YALFGGSSDQ ENTALEARMI  180
GPEEAALHLT TTAARHAPAR LMAALRALDL PVQHACVCRL GGVTVQDVVV DVPSAGLRED  240
GRLRAALHGL LLQESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1789143761Transcription factor MYC2
5gnj_B5e-1789143761Transcription factor MYC2
5gnj_E5e-1789143761Transcription factor MYC2
5gnj_F5e-1789143761Transcription factor MYC2
5gnj_G5e-1789143761Transcription factor MYC2
5gnj_I5e-1789143761Transcription factor MYC2
5gnj_M5e-1789143761Transcription factor MYC2
5gnj_N5e-1789143761Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100RQRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406791e-44BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
GenBankKJ7267871e-44KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds.
GenBankKJ7282811e-44KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974086.25e-76transcription factor MYC2
TrEMBLA0A1E5UYS10.0A0A1E5UYS1_9POAL; Uncharacterized protein
STRINGSi015513m2e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-18bHLH family protein