PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023024.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 220aa    MW: 24003.1 Da    PI: 7.0214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023024.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1261106454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RRdr+N +f eLr  +P+       +++ a+ L  A+ YI +L
  Do023024.1  61 SHVEAERQRRDRLNRRFCELRAAVPTV-----SRMDRASLLSDATAYIAEL 106
                 899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.05957106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1560119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1661128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1061106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1163112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSCEVPEQWL VAGDVLDKRD DDDEPLDDGA DNSPSPPEPH AERKSRRGRK PGPRTAGPAS  60
SHVEAERQRR DRLNRRFCEL RAAVPTVSRM DRASLLSDAT AYIAELRGRV KELETEAKTR  120
RMTGAEASQS PQHFSLEVRM VGRDAASLRL TTPAARHAQA PACLMAAIRA LDLLVQNACV  180
CRVGGPTVQD VVVDVPAAGG LLGEDYLRAA LLHRLLQESV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1861116863Transcription factor MYC2
5gnj_B4e-1861116863Transcription factor MYC2
5gnj_E4e-1861116863Transcription factor MYC2
5gnj_F4e-1861116863Transcription factor MYC2
5gnj_G4e-1861116863Transcription factor MYC2
5gnj_I4e-1861116863Transcription factor MYC2
5gnj_M4e-1861116863Transcription factor MYC2
5gnj_N4e-1861116863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671RQRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.12e-70transcription factor bHLH14
TrEMBLA0A1E5UYG11e-156A0A1E5UYG1_9POAL; Uncharacterized protein
STRINGSb07g025310.18e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-26bHLH family protein