PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023050.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 191aa    MW: 19644.9 Da    PI: 10.4862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023050.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-1756105255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Do023050.1  56 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 105
                 69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-3155114IPR001471AP2/ERF domain
PROSITE profilePS5103222.97256113IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2256115IPR016177DNA-binding domain
SMARTSM003802.8E-3756119IPR001471AP2/ERF domain
PfamPF008471.5E-1056105IPR001471AP2/ERF domain
PRINTSPR003675.2E-125768IPR001471AP2/ERF domain
CDDcd000189.45E-2262115No hitNo description
PRINTSPR003675.2E-1295115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MERDATAFYP PPQPAPAAPA AVGPAAVVAG AAGGVGAAAV GAGNVRGGGG GGGGRQYRGV  60
RMRKWGKWVA EIREPNKRSR IWLGSYSTAV AAARAYDTAV FYLRGRSARL NFPDQLDGAA  120
ADDRPEGQKD GGGLTAAAIR KKAAEVGARV DALHCGVAGG PPPPQPLSSH RRRAKNPDLN  180
REPTPDTSDD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1654117367ATERF1
3gcc_A6e-1654117367ATERF1
5wx9_A2e-15561171476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14554RGGGGGGGGR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556821e-111EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813567.11e-74ethylene-responsive transcription factor RAP2-9-like
SwissprotO221744e-42ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1E5VTH61e-130A0A1E5VTH6_9POAL; Ethylene-responsive transcription factor ERF008
STRINGPavir.J20437.1.p3e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-33DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]