PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023090.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 87aa    MW: 9391.11 Da    PI: 7.5262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023090.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08449345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT    +l+ da  ++ ++   +W  +ar +g g+t  ++k ++ 
       Do023090.1  4 SWTFSQNKLFEDALDKYDKDtpdRWQNVARAVGGGKTVDDVKRHYA 49
                     7*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-6154IPR001005SANT/Myb domain
PROSITE profilePS5129310.297156IPR017884SANT domain
SuperFamilySSF466891.28E-11359IPR009057Homeodomain-like
PfamPF002491.2E-5449IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSSWTFSQN KLFEDALDKY DKDTPDRWQN VARAVGGGKT VDDVKRHYAE LVRDTTNIDA  60
TGLQNLQYGG SSSSNAKGGG SSSSTGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-154771085RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813661.13e-28protein RADIALIS-like 4 isoform X3
SwissprotQ1A1732e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5UIV72e-56A0A1E5UIV7_9POAL; Uncharacterized protein
STRINGPavir.Da01122.1.p6e-36(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-24RAD-like 6