PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023119.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 127aa    MW: 14128.5 Da    PI: 9.6374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023119.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS100.91.9e-31712074185
        GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                  ++ l+a++lf  ++ + k+++   N++I +a++g +++ i+D+++++G+QW+ Ll+ La+R++gpp+++iTg++ p++g   + ++eetg+rL++ A+
  Do023119.1   7 AIDFLKAYQLFMAACCCKKVAFTFSNKTIFDAFAGRHCLNIVDYGLGYGFQWLGLLRGLAARQGGPPEVKITGIDLPQPGfrPAYQIEETGRRLSNCAH 105
                 57899**************************************************************************99999*************** PP

        GRAS 171 elgvpfefnvlvakr 185
                 e+g+pf f+ ++akr
  Do023119.1 106 EFGMPFTFRGIAAKR 120
                 **********87764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.5051127IPR005202Transcription factor GRAS
PfamPF035146.6E-297120IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MLRRISAIDF LKAYQLFMAA CCCKKVAFTF SNKTIFDAFA GRHCLNIVDY GLGYGFQWLG  60
LLRGLAARQG GPPEVKITGI DLPQPGFRPA YQIEETGRRL SNCAHEFGMP FTFRGIAAKR  120
ETALLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-14411988197Protein SCARECROW
5b3h_D2e-14411988197Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827844.15e-68scarecrow-like protein 9
TrEMBLA0A1E5UX643e-89A0A1E5UX64_9POAL; Uncharacterized protein
STRINGPavir.J39141.1.p6e-70(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-30GRAS family protein