PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023120.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 102aa MW: 12001.7 Da PI: 9.2796

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023120.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	87.8	1.8e-27	2	99	225	322
GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 d+vL+ +++++P+++++ + ++++ Fl+rf e l ++sa fd l+a++pr+s+er +Er ++gr++ nv+acega+r+er et+++W++r ++a Do023120.1 2 DQVLNNIRKMRPDMFIHGVINGAYGTTYFLTRFREVLFHCSAQFDLLDATVPRDSQERLLIERDIFGRAALNVIACEGADRVERPETYKQWQARNQRA 99 79******************************************************************************************997776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.257	1	102	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-25	2	99	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MDQVLNNIRK MRPDMFIHGV INGAYGTTYF LTRFREVLFH CSAQFDLLDA TVPRDSQERL 60 LIERDIFGRA ALNVIACEGA DRVERPETYK QWQARNQRAR LR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827844.1	3e-57	scarecrow-like protein 9
Swissprot	O80933	2e-37	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1E5UXB2	3e-70	A0A1E5UXB2_9POAL; Scarecrow-like protein 9
STRING	Pavir.J31658.1.p	8e-55	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37416	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	8e-40	GRAS family protein