PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023137.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 364aa    MW: 38970.6 Da    PI: 11.8571
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023137.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.36.5e-30681582101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++e++ed++++ ++sw +  nsfvv+d++ fa  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F + +++ll++i+
    Do023137.1  68 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPHAFAAGLLPRRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAAQRHLLTNIR 155
                   9********************999******************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    Do023137.1 156 RRR 158
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3063157IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5064157IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3265157IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-156891IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.7E-2768157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-15106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-15119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSPAKTPTHT HPSKRALSSP AALCRMEHPA AVTVKQEEGV VLDVEGDETR SLGAGAAPEP  60
PASAVPPFLA KTFELVEDPA TDGVVSWGAA RNSFVVWDPH AFAAGLLPRR FKHANFSTFL  120
RQLNTYGFRK VSPDRWEFAH ADFLAAQRHL LTNIRRRRGA AGGGFKAAKT SAAGSGDREK  180
ELEKLRRNRE ALAQELTRLR REQLLDMERA CGARSRAQQP SSRAPSGTRP RPWRPEGRGG  240
GDHAGRGGCS RVRGAGSRGG RRGRGGSHPG RRDVGPERRR HHQAGHDMER AAGGGDGADR  300
RRGGGGAGCS SRRRGHRGAV GGDGRGGGSR LGAADRLLGI ADVLLISTRW QLGSFQLPTG  360
DVDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A9e-24651577110Heat shock factor protein 1
5hdn_A9e-24651577110Heat shock factor protein 1
5hdn_B9e-24651577110Heat shock factor protein 1
5hdn_C9e-24651577110Heat shock factor protein 1
5hdn_D9e-24651577110Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727012e-87AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966067.17e-87putative heat stress transcription factor A-6a
TrEMBLA0A1E5VBE90.0A0A1E5VBE9_9POAL; Putative heat stress transcription factor A-6a
STRINGSi006875m3e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-42heat shock transcription factor A2