PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023429.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 139aa    MW: 14928.6 Da    PI: 5.2215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023429.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-053050323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cg+ F ++  L  H++ H
  Do023429.1 30 CTYCGRKFYTSQALGGHQNAH 50
                ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-81772No hitNo description
PROSITE profilePS5015711.7392855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
METEQELDLE LRLHRSPSPE LEEPVGFFLC TYCGRKFYTS QALGGHQNAH KYERTLAKRR  60
REIVAALRGH GAASGTAAVQ VVDIADADGD SPGAAGAADS DVEKARPLGA QQAAPAPGQY  120
GGLLRHVDYA DELDLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023429.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600651e-46EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661315.13e-47uncharacterized protein LOC101764348
TrEMBLA0A1E5VV821e-95A0A1E5VV82_9POAL; Uncharacterized protein
STRINGPavir.Ia03271.1.p9e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-15zinc finger protein 2