PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023563.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 184aa    MW: 19737.3 Da    PI: 6.027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023563.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-172575156
         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g+
  Do023563.1 25 PVYRGVRLR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAALALRGA 75
                68****975..6*********66.....68*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-112574IPR001471AP2/ERF domain
PROSITE profilePS5103218.7822682IPR001471AP2/ERF domain
SMARTSM003801.9E-232688IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-182683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-252683IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MERRRQEEQR TGPCGRRARA ETRHPVYRGV RLRAGKWVSE IRELRKPSRI WLGTYPTPEM  60
AAAAYDAAAL ALRGAGTALN FPDAARSHPA PASACPEDVR AAAAAAAAAM MDSCRGIGRH  120
HELRGDDGGG ADAMAGVVDE DDLFEMPRLM MSMAEGLMMS PPVLGPAAAS LEAEEEGVSL  180
WDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1224821272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023563.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983870.13e-71ethylene-responsive transcription factor ERF026
SwissprotA2WZI42e-40DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-40DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A1E5VEG71e-127A0A1E5VEG7_9POAL; Uncharacterized protein
STRINGPavir.Ib02495.1.p4e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-24C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]