PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023567.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 383aa    MW: 41172.9 Da    PI: 7.932
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023567.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.5e-2520112182
    trihelix   1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                 rWt+qe+l+Lie++r +e++ r rg+             ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e++ +++++   + f
  Do023567.1  20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggdgaagAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGFAARKE---ASF 112
                 8****************9999853335577788888888********************************************9744433...334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3532091IPR017877Myb-like domain
PfamPF138371.5E-1020103No hitNo description
Gene3DG3DSA:1.10.10.602.0E-52090IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGDGAAGAE  60
PTKWAAVAEY CRRHGVDRGP VQCRKRWSNL AGDYKKIREW ERGFAARKEA SFWAMRNDAR  120
RERRLPGFFD REVYDILEGR AVGPAGNAAA AAAARPVVVD VESKAEVTAA IDGARGAEGA  180
GLFSSSEDED DQEDDAATPS PTRTPTPVAL PIPGEQVVPS FFLAASSFST HGENSRAFVL  240
AKGTNFLSLG FLTSNCYLAD IALLPAVSFA EKKTTDVPMQ ESSEQAGTSK GKQPEQVTED  300
SPAQCGQKRQ RSDDDASGRA AAPDLQGQLV EILDRSSQMV AEQLEAQNIN SRLDREQRKE  360
QVSSLLGVLG KVADALFRIA DKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RGRGRGRARG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023567.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493561e-162EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826048.11e-175trihelix transcription factor ASR3-like isoform X1
SwissprotQ8VZ204e-52ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1E5UUT50.0A0A1E5UUT5_9POAL; Trihelix transcription factor ASR3
STRINGGRMZM2G149590_P011e-149(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-48Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]