PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023632.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 464aa    MW: 49869.1 Da    PI: 10.0298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023632.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-18250300155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++ a+++l+g
  Do023632.1 250 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALDAARAYDSAARALYG 300
                 679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.178251308IPR001471AP2/ERF domain
SMARTSM003806.1E-31251314IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-19252308IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-28252307IPR001471AP2/ERF domain
PfamPF008472.5E-11252300IPR001471AP2/ERF domain
CDDcd000181.31E-24252306No hitNo description
PRINTSPR003677.1E-9252263IPR001471AP2/ERF domain
PRINTSPR003677.1E-9274290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
LSHGCMRTRE QYVFHLCRRP PQPQPPAHCT PVKRGREQRC RGDDDTRAPA RRPAEWIGTQ  60
PGPHPSPFAS ADLTGLVGPG ASTATWPPVA RPRRRPTLHG GAMQCQAPAG RPATRRPPLS  120
LSTSSAFMCI GMHANCTAHP SPPCAYKLQQ RRARQPAISR TQQATASPRH QQRLPLPPFH  180
HQLSQQQQGA AAAAGGGGGR QQQMQPQHQQ GSSRAAAAGG SGAGGRKCCP LRRSRKGCMK  240
GKGGPENQRC PFRGVRQRTW GKWVAEIREP NRGARLWLGT FATALDAARA YDSAARALYG  300
DCARLNLLHA VPPAAAAAAS ANNNMMVMKT SPAGSPSSSP DTVDGPAGHY HQYKQEPMMM  360
MTTTSTPSAD ASSNYSNSSS SAMTMAMQQM MVKELAATNQ QQQETDDFED YVTRLPKAED  420
FGLGGFQEVP PEVFEDSAAG IWDDTVGWAS TTMVDDPAQV AVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-13252307662ATERF1
3gcc_A3e-13252307662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-103AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-103AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-103AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-103AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-103AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-103CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678419.12e-73dehydration-responsive element-binding protein 2C
TrEMBLA0A1E5UUL30.0A0A1E5UUL3_9POAL; Dehydration-responsive element-binding protein 2C (Fragment)
STRINGSi024059m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.17e-28ERF family protein