PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023811.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 446aa    MW: 48071.8 Da    PI: 9.5879
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023811.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-08106152155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I           f+l++  + ++ A +a+++a+ k++g
  Do023811.1 106 SQYRGVTFYRRTGRWESHI---------CIFHLNTPLFsPDSACRAYDQAAIKFRG 152
                 78****************5.........559999999999************9997 PP
2AP243.39.1e-14195245155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Do023811.1 195 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCHG 245
                 789*******.7******77733....25**********77***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-6106161IPR016177DNA-binding domain
SMARTSM003801.1E-11107166IPR001471AP2/ERF domain
PROSITE profilePS510329.98107160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-5107160IPR001471AP2/ERF domain
CDDcd000185.23E-24195255No hitNo description
SuperFamilySSF541712.03E-17195253IPR016177DNA-binding domain
PfamPF008473.5E-9195245IPR001471AP2/ERF domain
SMARTSM003805.7E-34196259IPR001471AP2/ERF domain
PROSITE profilePS5103215.949196253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17196253IPR001471AP2/ERF domain
PRINTSPR003672.2E-6197208IPR001471AP2/ERF domain
PRINTSPR003672.2E-6235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAATKRAFHG GVVDGIARAV AEEELQADRR RPEDGARRMI FGFLVPGLPT RPAAVVTQQF  60
FPATVAAAAP APQAVEQCHV PAASGADQWA RSASRKSRRG PRSRSSQYRG VTFYRRTGRW  120
ESHICIFHLN TPLFSPDSAC RAYDQAAIKF RGVNADINFT LSDYKDEIKK MKNFSKEEFV  180
QVLRRQGAGF VRGSSRFRGV TQHKCGKWEA RIGQLMGKKY VYLGLYDTEM EAAQAYDKAA  240
IKCHGKEAVT NFEPQAYEEE LQVQSWDGEL DLELSLGCAG GDPSTVVAVE ASNPAPSKQR  300
TMTLTLDLPE DVETGAGAYP HRSIRTRPSP TPGTFRLPLG DGHVHHPGAG SRDTLHMLQM  360
GQVGSSGGAA AAAAAGAHMR WPNGGGNNWA PPYATARAGP DDDASSAAAA SSGFPMGQHS  420
AAAAAGRGRR PGPAAEPVQH QQQWRH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU414661e-154U41466.1 Zea mays Glossy15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965778.10.0uncharacterized protein LOC101769206 isoform X2
SwissprotB8B0I81e-139AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A1E5WF390.0A0A1E5WF39_9POAL; Floral homeotic protein APETALA 2
STRINGSi006371m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-68AP2 family protein