PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023815.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 233aa    MW: 25416.9 Da    PI: 10.0875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023815.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.72.1e-14128204278
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknrat 78 
                 p G+rF+Pt+eel+ +yL+ k +g + +++ +++kevd+y+v+ ++ ++ + ++ +  wy Fs+r++ky++gkr+ r++
  Do023815.1 128 PSGVRFKPTNEELI-FYLRLKHAGVQkMPV-DFFKEVDVYHVHQETTKAlCGESLNGYWYVFSPRNRKYKNGKRPARSV 204
                 79************.999999888773666.99**********999985244444559******************953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-14121204IPR003441NAC domain
PROSITE profilePS5100516.374127233IPR003441NAC domain
PfamPF023655.3E-6128196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQTTPLVLVQ TTSVEPSYYR QTQGAAASAA TKAVIVHEDP DTHKAQESTK PAPRKTAAAK  60
LVFEPPKRAV APSNQAASPR TASVTDPATM AGQVQVHEPE QAGSVVAVAA ADQIAPCTKS  120
MALLYTSPSG VRFKPTNEEL IFYLRLKHAG VQKMPVDFFK EVDVYHVHQE TTKALCGESL  180
NGYWYVFSPR NRKYKNGKRP ARSVFEARGE QVAIGSPTPS WRLYSSVAKM TAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo023815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UZZ31e-171A0A1E5UZZ3_9POAL; Uncharacterized protein
STRINGSi039443m1e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.19e-15NAC family protein