PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023914.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

M-type_MADS

Protein Properties

Length: 62aa MW: 7119.61 Da PI: 10.8977

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023914.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.5	2.6e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ en+s r vt+skRr gi KKA+ELS+LCd++ +++fs+t k Do023914.1 9 KKLENNSARVVTYSKRRSGIVKKAKELSILCDIDLILLMFSPTEK 53 5679**************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.623	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-22	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.7E-27	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	9.93E-20	2	54	No hit	No description
PRINTS	PR00404	1.4E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-19	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MGRVKLKIKK LENNSARVVT YSKRRSGIVK KAKELSILCD IDLILLMFSP TEKPTICISE 60 RR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023914.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008677900.1	8e-30	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_008677901.1	8e-30	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_008677902.1	6e-30	agamous-like MADS-box protein AGL65 isoform X2
Refseq	XP_021317426.1	5e-30	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_021317427.1	5e-30	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_021317428.1	4e-30	agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q1PFA4	1e-22	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A1E5UX03	1e-35	A0A1E5UX03_9POAL; Uncharacterized protein
STRING	Sb05g025970.1	1e-29	(Sorghum bicolor)
STRING	GRMZM2G441115_P01	3e-30	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	6e-15	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]