PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023969.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

ERF

Protein Properties

Length: 131aa MW: 14715 Da PI: 8.8311

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023969.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	15	67	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ Do023969.1 15 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 67 69******.******432...25***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.6E-14	15	66	IPR001471	AP2/ERF domain
CDD	cd00018	1.36E-28	15	76	No hit	No description
SMART	SM00380	9.2E-34	16	80	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-23	16	75	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.815	16	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	16	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-12	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-12	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MDGDWSKDGG GGEPTKYRGV RRRPWGKYAA EIRDSSRHGV RIWLGTFDTA EEAARAYDRS 60 AYSMRGANAV LNFPEDAHVY AASRGSGSGS SSSRQQQQPG RDVIEFEYLD DEVLQEMLRN 120 HDDGNKSRKK K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-37	9	130	7	131	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023969.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727519	1e-112	KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652442.1	2e-67	ethylene-responsive transcription factor ERF096
Swissprot	Q9LSX0	4e-37	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	A0A1E5UTY7	3e-91	A0A1E5UTY7_9POAL; Ethylene-responsive transcription factor ERF096
STRING	GRMZM2G060517_P01	7e-67	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	2e-37	ERF family protein

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]