PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024046.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 189aa MW: 21259.5 Da PI: 7.3241

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024046.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G g+W+ I+r +Rt+ q+ s+ qky Do024046.1 122 PWSEEEHRLFLQGLEKYGRGDWRNISRFSVRTRTPTQVASHAQKY 166 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.69	16	70	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.6E-5	19	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.44E-10	19	69	IPR009057	Homeodomain-like
SMART	SM00717	0.085	20	72	IPR001005	SANT/Myb domain
CDD	cd00167	3.57E-4	23	61	No hit	No description
PROSITE profile	PS51294	17.879	114	171	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-17	117	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-17	119	170	IPR006447	Myb domain, plants
SMART	SM00717	3.6E-11	119	169	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-12	122	171	IPR009057	Homeodomain-like
CDD	cd00167	1.12E-11	122	167	No hit	No description
Pfam	PF00249	9.0E-12	122	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MDFHNHQLHS VRAAGPPAVA ARPWSKAEDK VFEGALVMWP EHAPDRWALV AAQLPGRTPR 60 EAWEHYEALV ADVDLIERGA VDTPSSWDDD DEASGGGGEE GGPARRAGAD RPRREGRRPG 120 IPWSEEEHRL FLQGLEKYGR GDWRNISRFS VRTRTPTQVA SHAQKYFNRQ LNPASRDSKR 180 KSIHDITTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-15	20	85	7	72	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024046.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679436	0.0	HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970674.1	1e-104	transcription factor DIVARICATA
Swissprot	Q8S9H7	2e-47	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1E5UTG3	1e-134	A0A1E5UTG3_9POAL; Transcription factor DIVARICATA
STRING	Si003047m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2895	36	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	5e-43	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]