PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024182.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LSD

Protein Properties

Length: 974aa MW: 101458 Da PI: 3.9799

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024182.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	46.3	6.7e-15	921	945	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+tlL+YP+GAp+V+C++C++V Do024182.1 921 CGQCDTLLMYPFGAPAVKCSNCHFV 945 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.4E-9	880	910	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-5	883	907	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.2E-8	919	946	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.6E-12	921	945	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence Send to blast
MAASPETAKP PESSDTHSSP HPPSSPGLHP TQESPSLTTA APLEMANPNH ATPVPPAPAE 60 RSRLEHPEVD QPPPTPTDEA EPPLSHPPAE AAPAASPAFE AIPTEKLASP PPLPEDVAVA 120 VSPEVAASAP SPSPSPSPQI VGASLEDAPQ PPSLPRTPPA TTGHASTDPS TTEGMAMASQ 180 EEAARPSPAP ESMHADSHTA PAPLAPPMEC GPEGLLPQRQ PRPPSPEMGL PLCGNSEPTQ 240 PTPSQPCHPA ECTDASPDAT VDEIVEGRSE KAPGSLPLPE ATDGDMDTTP GMLPALEIGP 300 EEMLQQQQPR PPCSEMAPSR GENLKPAQAL QPPPPPESTY GWLNAAMNEV SAVASEEATP 360 LALEATDGEM GLEFGAEMSL WESVQTSTTS RMEAEPCSLE MAPPGFEDFK SQWLPLSPPI 420 LAESTHNAVL AAAADPVGST LGAATESLSA LEAIDVETDI SPGLLPLLKS GAEGQSQQPL 480 LGSCSPVTEA APSSPDMPPP GFENCKSSWL PLPTLPPLTQ TTYALQDVAS TKAVTVAFVE 540 KACSVLALEA TDVETDTERC QLTPLESGTG SSLQGPLPRL PSPMMQASAT NEAMHVTSDE 600 APQSSPALEA NLDVDDTPAL APPLESEAGK SLPLEPPIVP SHVAHHTVCS LGTVPSGSEN 660 VESSQLPLPP PAVLPLDQNP DTLADAGTKT VMMEEVCHPL PVTGATEEAN GSTLPPALEN 720 GCEGPLPHLE PQASSAAVHA TPASSEIAPT GFENSESSQQ TSAQTSATMP MIVESEKTNL 780 PLSPFQAKDT DMESETQQQL PLKSEGTSLP QPEQCPSSPS VKDTTCSPEA APPGYENLDS 840 LEQLPPPPPL STKFGQYFSS FFKLTFLCVD LLLTCTEMGQ MVCGCCRQLL AYPRGAVHVE 900 CYGCCTINLV LEEHQIGKVS CGQCDTLLMY PFGAPAVKCS NCHFVTEIGE RNVRPRISME 960 QSASPHPQEV AHQS

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence Send to blast

MAASPETAKP PESSDTHSSP HPPSSPGLHP TQESPSLTTA APLEMANPNH ATPVPPAPAE  60
RSRLEHPEVD QPPPTPTDEA EPPLSHPPAE AAPAASPAFE AIPTEKLASP PPLPEDVAVA  120
VSPEVAASAP SPSPSPSPQI VGASLEDAPQ PPSLPRTPPA TTGHASTDPS TTEGMAMASQ  180
EEAARPSPAP ESMHADSHTA PAPLAPPMEC GPEGLLPQRQ PRPPSPEMGL PLCGNSEPTQ  240
PTPSQPCHPA ECTDASPDAT VDEIVEGRSE KAPGSLPLPE ATDGDMDTTP GMLPALEIGP  300
EEMLQQQQPR PPCSEMAPSR GENLKPAQAL QPPPPPESTY GWLNAAMNEV SAVASEEATP  360
LALEATDGEM GLEFGAEMSL WESVQTSTTS RMEAEPCSLE MAPPGFEDFK SQWLPLSPPI  420
LAESTHNAVL AAAADPVGST LGAATESLSA LEAIDVETDI SPGLLPLLKS GAEGQSQQPL  480
LGSCSPVTEA APSSPDMPPP GFENCKSSWL PLPTLPPLTQ TTYALQDVAS TKAVTVAFVE  540
KACSVLALEA TDVETDTERC QLTPLESGTG SSLQGPLPRL PSPMMQASAT NEAMHVTSDE  600
APQSSPALEA NLDVDDTPAL APPLESEAGK SLPLEPPIVP SHVAHHTVCS LGTVPSGSEN  660
VESSQLPLPP PAVLPLDQNP DTLADAGTKT VMMEEVCHPL PVTGATEEAN GSTLPPALEN  720
GCEGPLPHLE PQASSAAVHA TPASSEIAPT GFENSESSQQ TSAQTSATMP MIVESEKTNL  780
PLSPFQAKDT DMESETQQQL PLKSEGTSLP QPEQCPSSPS VKDTTCSPEA APPGYENLDS  840
LEQLPPPPPL STKFGQYFSS FFKLTFLCVD LLLTCTEMGQ MVCGCCRQLL AYPRGAVHVE  900
CYGCCTINLV LEEHQIGKVS CGQCDTLLMY PFGAPAVKCS NCHFVTEIGE RNVRPRISME  960
QSASPHPQEV AHQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024182.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969153.1	0.0	proteoglycan 4
TrEMBL	A0A1E5VMU3	0.0	A0A1E5VMU3_9POAL; Protein LOL5
STRING	Si000307m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-30	lsd one like 2