PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024422.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 220aa    MW: 23657.5 Da    PI: 4.6025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024422.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-183079255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Do024422.1 30 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 79
                69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-123079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-323088IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-213088IPR016177DNA-binding domain
PROSITE profilePS5103223.2483087IPR001471AP2/ERF domain
SMARTSM003805.9E-353093IPR001471AP2/ERF domain
PRINTSPR003679.9E-113142IPR001471AP2/ERF domain
CDDcd000181.13E-293189No hitNo description
PRINTSPR003679.9E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGGEEEEEEF EGKTPAAKKR KRSSEGKHPT YRGVRMRAWG KWVSEIREPR KKSRIWLGTF  60
PTAEMAARAH DVAALAIKGR AAHVNFPDLA GVLPRAASAA PKDVQAAAAL AAAFTSPSSS  120
PSSEPEASAP EPCQAQEEPA TKNVAAQAEE ASADAAVPPP ASQPATPSSG IEEERQLFDL  180
PDLLLDIRDG FGCFPPMWAP LPDVEEVNAE LRLEEPLLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1728871272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024422.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3147030.0KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796401.14e-92ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1E5V3V51e-154A0A1E5V3V5_9POAL; Ethylene-responsive transcription factor ERF034
STRINGPavir.Ia02208.1.p2e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]