PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024456.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 328aa    MW: 36154.2 Da    PI: 5.7912
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024456.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.8e-1929114286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergfer.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W++ e+l+Li+a+ +++++l+rg+lk+++We+v++ +      +   ++r + +qC++k+e+l+kry+ + ++         s +p+f+ ++
  Do024456.1  29 WSHAETLHLIDAYGKRWTELGRGQLKAQQWEQVAADVaalcadAGVAVQRkTGTQCRHKLEKLRKRYRTEGARPVT------SLWPFFRAMD 114
                 *************************************999966555555569****************98777764......68****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-42195IPR009057Homeodomain-like
PfamPF138371.4E-1827114No hitNo description
SMARTSM005950.002636121IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMAAGAREDA DGPPRRAAAL KKSAPAQPWS HAETLHLIDA YGKRWTELGR GQLKAQQWEQ  60
VAADVAALCA DAGVAVQRKT GTQCRHKLEK LRKRYRTEGA RPVTSLWPFF RAMDLLERGP  120
NAVSSGYPPA AGSPPAAASD EEEEEEEEEE EEEEHEEEEE EELVPRNNNT RSINGIIREF  180
GSGLAPRHPQ LQLQQPPPSP SITPSTAPPR KRVAYEAFQA KAAAAAAAAV AADKAKEEEV  240
ELARRPSGSR GANAQLSAVL RDFSEGVMRL ERRRMEVQWE IERGWQETEA RHAKMLQDAQ  300
RQVRDAIAAS CALPPKKARR DYGSSGDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.11e-167uncharacterized protein LOC112896572
TrEMBLA0A1E5UMA90.0A0A1E5UMA9_9POAL; Uncharacterized protein
STRINGPavir.J15698.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-17Trihelix family protein