PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024493.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 71aa    MW: 7989.22 Da    PI: 8.9273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024493.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000331030121
                EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                y C+ C+k+F++      H++
  Do024493.1 10 YMCSFCTKTFKSLQARGGHQN 30
                89*********9876666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-5736No hitNo description
PROSITE profilePS501579.1821037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MQPQNLETLY MCSFCTKTFK SLQARGGHQN AHKKEVAMLR RALEEEMANK CAKRARSGSD  60
IGASLDMNLE L
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024493.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5V6142e-45A0A1E5V614_9POAL; Uncharacterized protein
STRINGPavir.Db00769.1.p1e-29(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2103446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-09zinc finger protein 4