PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024495.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24114.3 Da    PI: 4.6606
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024495.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien   rqvtfskRr+g+lKKA+EL vLCd++v ++ fs++g+++ y++
  Do024495.1  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDVDVGLVFFSERGRMFQYPN 59
                79***********************************************85 PP
2K-box622.3e-21691471491
       K-box  14 aeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                 ++++  e+ kL+ e+e+L+ ++R + GedL+ L s+ eL +LeqqLe++l+k+R++K+ell++ ++elq k  e+  ++
  Do024495.1  69 QQEMIAEIGKLRHEYEQLEASLRAYTGEDLSALdSVDELDELEQQLESALSKVRARKDELLIDLTNELQLKVTETLTIK 147
                 689999***************************6689**********************************99876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-27271IPR002100Transcription factor, MADS-box
CDDcd002658.12E-35266No hitNo description
PRINTSPR004048.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.06169154IPR002487Transcription factor, K-box
PfamPF014865.3E-1869142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD VDVGLVFFSE RGRMFQYPNP  60
PTRLTLPLQQ EMIAEIGKLR HEYEQLEASL RAYTGEDLSA LDSVDELDEL EQQLESALSK  120
VRARKDELLI DLTNELQLKV TETLTIKGNA RHDAAVETEE VAEPLPPSPS FAYLLNVNET  180
SAASTMLQLW PQTDDDDDDV RGSSTPPPPR GLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-16160160Myocyte-specific enhancer factor 2B
1tqe_Q1e-16160160Myocyte-specific enhancer factor 2B
1tqe_R1e-16160160Myocyte-specific enhancer factor 2B
1tqe_S1e-16160160Myocyte-specific enhancer factor 2B
6c9l_A1e-16160160Myocyte-specific enhancer factor 2B
6c9l_B1e-16160160Myocyte-specific enhancer factor 2B
6c9l_C1e-16160160Myocyte-specific enhancer factor 2B
6c9l_D1e-16160160Myocyte-specific enhancer factor 2B
6c9l_E1e-16160160Myocyte-specific enhancer factor 2B
6c9l_F1e-16160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811394.11e-100MADS-box transcription factor 30-like
SwissprotQ655V47e-46MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A1E5VXD21e-154A0A1E5VXD2_9POAL; MADS-box transcription factor 30 (Fragment)
STRINGPavir.J10823.1.p8e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-27MIKC_MADS family protein