PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024644.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 244aa    MW: 26653.9 Da    PI: 9.8184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024644.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-1087132454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+ Rd++N +f eLr  +P+       +++K++ L  +  YI++L
  Do024644.1  87 SHVEAERQCRDKLNRRFCELRAAVPTV-----SRMDKVSLLADVAAYISEL 132
                 799***********************6.....49***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.42783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1386147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-987137No hitNo description
Gene3DG3DSA:4.10.280.104.8E-1487146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-787132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-889138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLVPPRRPWI APHGKLSLPA SFFSTAGHHQ ELDFVSSEVL EQWLGSEDCL DGTAWGDNGL  60
SGGQPPAPAP KKRGRKPGPR TNGPPISHVE AERQCRDKLN RRFCELRAAV PTVSRMDKVS  120
LLADVAAYIS ELRDRVKQLE AEAKQAAAVT VVALVHSSPG VLEKLEVRMV VWQEAAALRL  180
TTTTARHTPA LLMLALRSLD LPVLHACVCR VVGGVTVQDA VVDVPAAALR DKRRLRHALF  240
CRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-1885145666Transcription factor MYC2
5gnj_B8e-1885145666Transcription factor MYC2
5gnj_E8e-1885145666Transcription factor MYC2
5gnj_F8e-1885145666Transcription factor MYC2
5gnj_G8e-1885145666Transcription factor MYC2
5gnj_I8e-1885145666Transcription factor MYC2
5gnj_M8e-1885145666Transcription factor MYC2
5gnj_N8e-1885145666Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444645.13e-85transcription factor bHLH14
TrEMBLA0A1E5USC91e-176A0A1E5USC9_9POAL; Uncharacterized protein
STRINGSb07g025330.11e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-15bHLH family protein