PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024729.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 257aa    MW: 26696.9 Da    PI: 4.7246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024729.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-183681352
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ 
  Do024729.1 36 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 81
                9****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-123481IPR001471AP2/ERF domain
SMARTSM003805.3E-353598IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-213592IPR016177DNA-binding domain
PROSITE profilePS5103223.1033592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-313593IPR001471AP2/ERF domain
CDDcd000182.50E-193693No hitNo description
PRINTSPR003671.3E-103647IPR001471AP2/ERF domain
PRINTSPR003671.3E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPDSGVTSSA SPPGGVEKRG GRGGKSGGSG GRRPAYRGVR MRAWGKWVSE IREPRKKSRI  60
WLGTFPTAEM AARAHDAAAL VVKGPGAVLN FPEIAASLPR PASTAPRDVQ AAAARAAAMD  120
VPVAVAVAVG AAATTVLAAT PDEPQSRHHQ QVPAGQAASD PDEEELEEIV ELPAISDEDV  180
LAADDMFWTA ASFHDPASAN DPWYEPAAAW MHAAGIAAHA DDDMAVPVGA GFAADQLWTL  240
QPDGIVWSGF GALLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-172892772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-118EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813011.17e-89ethylene-responsive transcription factor ERF038-like
TrEMBLA0A1E5WDE91e-180A0A1E5WDE9_9POAL; Uncharacterized protein
STRINGGRMZM2G073047_P019e-76(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.18e-28ERF family protein