PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024786.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 424aa    MW: 45155.9 Da    PI: 9.916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024786.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20189238255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Do024786.1 189 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 238
                 7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-33188247IPR001471AP2/ERF domain
CDDcd000186.78E-30189247No hitNo description
PROSITE profilePS5103224.711189246IPR001471AP2/ERF domain
SMARTSM003804.8E-38189252IPR001471AP2/ERF domain
PfamPF008472.2E-13189238IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22189247IPR016177DNA-binding domain
PRINTSPR003672.2E-11190201IPR001471AP2/ERF domain
PRINTSPR003672.2E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
LPSRARGSGS SKQLKLSPTH ARIDRSSSSD GRRRQIDRQL TKVDPRRHGK RPLPADEEEE  60
EPPPPPAKHE QLEDEQQYRV SQLQGATFSG GGGSSSSSIL VGAAAAGVPG PSPEAYAQYY  120
YSARADHDAD AVASALAHVI RASPDQLPPQ ALYAAAGAPG QGDHQHQQPP HHPGLAAAAE  180
EEEQGRRRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEDAAIAYD EAALRFKGTK  240
AKLNFPERVQ GRTDLGFLVT RGIPDRHHHH HHQGAVTLAA MPPPHRHGQH QHHHQTVVPY  300
PDLMQYAQLL QGGRGGGGGD HAEAAAAQQA RAQAQLMMMA RGGVNLPFGA ASFSPSSSSA  360
PQILDFTTQQ LIRPGPPSPA AAAMSSSGAA AAPSTPSSTT TASSPGGARA WPYGGEHHKN  420
KKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26188250467ATERF1
3gcc_A3e-26188250467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311318GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-134EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825288.11e-159uncharacterized protein LOC112900671
TrEMBLA0A1E5US140.0A0A1E5US14_9POAL; Uncharacterized protein (Fragment)
STRINGSi010289m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-22related to AP2 6l