PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024877.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 169aa    MW: 19020.9 Da    PI: 10.9018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024877.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-0878124347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       WT++E   lvd+v + G g W+++         Rt+ ++k++w+++
       Do024877.1  78 HWTEDEMVELVDGVSKKGIGKWSKVKGDYFstSIRTAVHLKDKWRNL 124
                      6************************999888988***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.06771129IPR017930Myb domain
SuperFamilySSF466895.74E-1373136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-1073127IPR009057Homeodomain-like
SMARTSM007170.001975127IPR001005SANT/Myb domain
PfamPF002491.5E-578124IPR001005SANT/Myb domain
CDDcd116602.63E-1679126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MLLDTVASTT YSSPGGSLAD RYGRPIKEDS VAESTDKAIT IVGPFGHNPN PVEVSQLFGS  60
QYPCTGGRKC RSRKNNDHWT EDEMVELVDG VSKKGIGKWS KVKGDYFSTS IRTAVHLKDK  120
WRNLVRACKA KTTSKRKVNI QKATELIVRR FRRRILAIEA KRLGIKKRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168RRRILAIEAKRLGIKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VTU21e-121A0A1E5VTU2_9POAL; Uncharacterized protein
STRINGSb01g020800.14e-59(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-14TRF-like 6