PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do024888.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 261aa MW: 28410.3 Da PI: 10.0496

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024888.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Do024888.1 46 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.151	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-32	43	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	46	101	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.24E-16	46	101	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-8	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-21	141	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFPGLIHHAG RGRPDAAGAE DGPRGGGLGL HGHGGGPSVV LTADPKPRLR WTADLHDRFV 60 DAVAQLGGPD KATPKAIMRT MGVKGLTLFH LKSHLQKYRL GRQSGKELTE QSKDASYLME 120 AQSGTNLSPR GSTPDMKESQ ELKEALRAQM EVQRRLHEQV EVQKHMQIRM EANQKYIDTI 180 LDKAFRIVSE QLSGFSISDQ DLPDLPSAGV MFSPADPLSP SVFHQLSVSS VSLHSPGGGK 240 ALPHVSIDIS QKPPELKRKS R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	46	102	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024888.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039053	0.0	BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds.
GenBank	JX469981	0.0	JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973254.1	1e-168	protein PHR1-LIKE 2
Swissprot	Q8LAJ7	1e-68	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A1E5UT09	0.0	A0A1E5UT09_9POAL; Protein PHR1-LIKE 3
STRING	Pavir.Fb00789.1.p	1e-161	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	7e-70	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]