PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025022.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 255aa    MW: 27805.5 Da    PI: 4.6524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025022.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-1387131655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Do025022.1  87 MVMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAITYIEQLQ 131
                 569*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.75181130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-1584135No hitNo description
SuperFamilySSF474591.07E-1684145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-1187131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1587136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1587145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEADLLSLGF DFYCQSPPRF FDEPYEPDLA VVDSIMYAPT EAESVTGLYP SYREASSSPD  60
GVNSCSTQMA PASPPSPPPG VAATKNMVME RDRRRRLNEK LYALRSVVPN ITKMDKASII  120
RDAITYIEQL QEEERQVLAE VSALESSDVT AAAVKTEDAA TGDADSYRWR KRIRMTADGG  180
VPRSIDASPP LQILEVQVSE AGEKMAVVSV RCSRGRDAVA KVCRALEPLR LRVVTASIAA  240
AGDTVVHTMF VEVSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9610232e-56EU961023.1 Zea mays clone 230521 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823076.11e-134transcription factor bHLH35-like isoform X1
TrEMBLA0A1E5URI20.0A0A1E5URI2_9POAL; Transcription factor bHLH35 (Fragment)
STRINGPavir.Gb02374.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-42bHLH family protein