PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025176.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 149aa    MW: 16095.9 Da    PI: 6.8729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025176.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-054769123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F ++  L  H++ H
  Do025176.1 47 FSCSYCDKKFYTSQALGGHQNAH 69
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.67E-74574No hitNo description
PROSITE profilePS5015711.4484774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAFEAPLSSC HTTLATMDPT GECGGGAHLD LNLSLRSSLD LEPQGYFSCS YCDKKFYTSQ  60
ALGGHQNAHK LERSIAKRSR ELAAARRHAT SQGGDSSSVA EEEEARRRGK EPRISAPVMT  120
PGSSHQVRAS PEEAGEHLIT DKIDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828607.14e-49zinc finger protein GIS3-like
TrEMBLA0A1E5VE071e-105A0A1E5VE07_9POAL; Uncharacterized protein
STRINGPavir.Ha01090.1.p3e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-17zinc finger protein 2