PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025367.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 254aa    MW: 27626 Da    PI: 8.5604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025367.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161464148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l  + +q+G+g   +W + +r+ g++R++k+c++rw++yl
       Do025367.1 14 RGPWSEEEDARLRSYMEQHGSGavgSWMALPRKAGLRRCGKSCRLRWLNYL 64
                     89***********************************************97 PP
2Myb_DNA-binding36.98.3e-1271113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd  +  +    G++ W++Ia++++ gRt++ +k++w++
       Do025367.1  71 GGFSPEEDRVICALYSAVGSR-WSLIAAHLP-GRTDNGVKNYWNT 113
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.824964IPR017930Myb domain
SuperFamilySSF466891.05E-2512111IPR009057Homeodomain-like
SMARTSM007171.6E-101366IPR001005SANT/Myb domain
PfamPF002494.6E-141464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-211571IPR009057Homeodomain-like
CDDcd001672.59E-71664No hitNo description
PROSITE profilePS5129420.93565119IPR017930Myb domain
SMARTSM007174.5E-1069117IPR001005SANT/Myb domain
PfamPF002493.6E-1071113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2272119IPR009057Homeodomain-like
CDDcd001678.05E-873115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRSPCCDKA TVKRGPWSEE EDARLRSYME QHGSGAVGSW MALPRKAGLR RCGKSCRLRW  60
LNYLRPGVRH GGFSPEEDRV ICALYSAVGS RWSLIAAHLP GRTDNGVKNY WNTRLKKQLP  120
LLFGGKQDNA GRWNLNVSAT PAMPPPPAPW TGLPYTGCGG GVDQMRVGAG GGTDDMIAST  180
KAAVVSSQPA DASYSSCEPA ATEPEEIFRS IGTTGGEHSD LSQSSTGIET SWYHCQHARE  240
SVLQQHLGTP YLYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141197108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964229.21e-132transcription factor RAX1
TrEMBLA0A1E5US200.0A0A1E5US20_9POAL; Transcription factor RAX3
STRINGPOPTR_0006s25060.11e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-65myb domain protein 84