PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025369.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 115aa    MW: 12247 Da    PI: 12.2208
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025369.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-201766255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +ykGVr+++ +grWv+eIr p++   rkr++lg++gt+e+Aa+a +aa  +l+g
  Do025369.1 17 KYKGVRRRR-WGRWVSEIRLPNS---RKRIWLGSYGTPEKAARAFDAAYVCLRG 66
                7*****777.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-121766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-261776IPR001471AP2/ERF domain
PROSITE profilePS5103221.9571776IPR001471AP2/ERF domain
CDDcd000182.59E-131776No hitNo description
SMARTSM003803.3E-271782IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-181776IPR016177DNA-binding domain
PRINTSPR003673.5E-91829IPR001471AP2/ERF domain
PRINTSPR003673.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MLPNAASSLL PPSGEMKYKG VRRRRWGRWV SEIRLPNSRK RIWLGSYGTP EKAARAFDAA  60
YVCLRGPGGA DGLNFPGSPP AVSPTPLTGG AHGRGVTRQP GGRHRRSSVG GNQGV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700624.11e-38ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-30ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1E5USY78e-76A0A1E5USY7_9POAL; Uncharacterized protein
STRINGSi008682m3e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-22ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]