PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025440.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25852.1 Da    PI: 6.5183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025440.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-241055247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                rien   rqvtfskRr g++KKAeEL vLCda+va+++fs tgkl 
  Do025440.1 10 RIENAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSATGKLS 55
                8*******************************************95 PP
2K-box42.72.4e-15821571388
       K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                 + +  q  ++ L +++ +  r +R++ Ge+Le Ls++eL+q+e++Le +l+++  +K++l+++qi+elq+k+  l+
  Do025440.1  82 DLNVEQSRYSVLDEQLVEASRGLRQMRGEELEGLSVEELHQMERKLEAGLQRVLITKDRLFMQQISELQQKNFHLS 157
                 4445577788888888888899*************************************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-31160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.198154IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-25168IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-223859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.82183180IPR002487Transcription factor, K-box
PfamPF014863.2E-1386157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARERREIRR IENAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSA TGKLSHMNDI  60
IDKYSTHSKN LGKSHQQQTS IDLNVEQSRY SVLDEQLVEA SRGLRQMRGE ELEGLSVEEL  120
HQMERKLEAG LQRVLITKDR LFMQQISELQ QKNFHLSNGS KWHIYNSVLN YFWMQMPQMP  180
TAGTAVVAAD TENVLTEDGQ SSESVMTNVH SGSSHDNDDG SDISLKLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-15183184MEF2C
5f28_B6e-15183184MEF2C
5f28_C6e-15183184MEF2C
5f28_D6e-15183184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306351e-123AJ430635.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m21 gene).
GenBankBT0415851e-123BT041585.1 Zea mays full-length cDNA clone ZM_BFb0012I22 mRNA, complete cds.
GenBankEU9642321e-123EU964232.1 Zea mays clone 277135 MADS-box transcription factor 22 mRNA, complete cds.
GenBankEU9672231e-123EU967223.1 Zea mays clone 300498 mRNA sequence.
GenBankKJ7269181e-123KJ726918.1 Zea mays clone pUT3463 MADS transcription factor (MADS74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964865.11e-122MADS-box transcription factor 55
SwissprotQ69TG59e-95MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLA0A1E5UQD51e-168A0A1E5UQD5_9POAL; MADS-box transcription factor 55
STRINGPavir.Da01333.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.26e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]