PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025500.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 456aa    MW: 47543 Da    PI: 6.1321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025500.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31214272259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Do025500.1 214 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 272
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684208274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31210274IPR003657WRKY domain
SuperFamilySSF1182903.92E-26211274IPR003657WRKY domain
SMARTSM007747.8E-38213273IPR003657WRKY domain
PfamPF031066.8E-26215272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MCDYFLQRME GDHHQAGDLT DVVRAGGVMQ AGVAELSSTV TAGWQLPAGE PGPGFFPAPR  60
PSSSDGAAGP NGDGFGDAFV GLSDAFGAGS DFRACSSGGA ADFFDFEAPV GGRGGGGALV  120
DSAGGGVVAR GVQMPVLSPG EIRAYPTMMP GVPTMMSGLA VGPTCAFDAV AGMQMPSPHG  180
GGIKRRKNQA RKVVCIPAPA ASAGGRTTGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS  240
SSKGCPARKQ VERSRTDPSL LVITYNSEHN HPWPTQRNAL AGSTRSHHAK NSKNNSSHNL  300
QKPIVKSEPD QTIATAATST TTTATTSTTS NSTPTTTTMA VKEEAMVGSE MEKGMDRGTS  360
VALDHDDPMQ QMFSQSYRPM IPEGGHHVDD FFADLAELES DPMSLIFPGG DPASREKATQ  420
KGLGADPLFN MLDWGATNVV ATSAGSSSFE QGESCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23187275280Disease resistance protein RRS1
5w3x_D2e-23187275280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619830.0BT061983.1 Zea mays full-length cDNA clone ZM_BFb0203F20 mRNA, complete cds.
GenBankKJ7277990.0KJ727799.1 Zea mays clone pUT5751 WRKY transcription factor (WRKY11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953547.10.0probable WRKY transcription factor 14
SwissprotQ9SA806e-68WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A1E5WCF50.0A0A1E5WCF5_9POAL; Putative WRKY transcription factor 35
STRINGSi017095m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-65WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]