PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025502.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 222aa    MW: 24093.8 Da    PI: 7.6812
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025502.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.59.2e-14173207133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C+nCg ++  Tp++Rrgp+g +t CnaCGl+++k+
  Do025502.1 173 CANCGESSeaTPMMRRGPNGCRTFCNACGLMWAKT 207
                 ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.19569104IPR010399Tify domain
PfamPF062003.9E-67398IPR010399Tify domain
PROSITE profilePS510178.661106149IPR010402CCT domain
PfamPF062034.9E-11106149IPR010402CCT domain
SMARTSM004012.7E-5167220IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-7170212No hitNo description
Gene3DG3DSA:3.30.50.109.0E-12173207IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.44E-10173222No hitNo description
PROSITE patternPS003440173200IPR000679Zinc finger, GATA-type
PfamPF003202.3E-11173207IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQQRSPSPSP SAAATGGGGG EEEDPFYDIV IPPEYLLPGL DGDDWCAYGG AALDADEDDG  60
RQRQQGGGDG GEAERLSMTY QGKAYVFDSV PPQKVQPIVV PRDFDRTAAV SRYREKRKST  120
LKFDVKADYS IRREIASRIA RRRGKFVSSD KSSEYPVAAA LRRHGEATEI EWCANCGESS  180
EATPMMRRGP NGCRTFCNAC GLMWAKTVRK ITNPACGGGG GR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828797.15e-54GATA transcription factor 20-like
TrEMBLA0A1E5W7441e-161A0A1E5W744_9POAL; Uncharacterized protein
STRINGSi027518m5e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-15ZIM-like 1