PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025537.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 202aa    MW: 22469.1 Da    PI: 4.7502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025537.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l   v+++G+  +W + +++ g++R++k+c++rw++yl
       Do025537.1 14 RGPWSQEEDAILRSFVERFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89******************99*************************97 PP
2Myb_DNA-binding42.81.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
       Do025537.1  69 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.678962IPR017930Myb domain
SuperFamilySSF466893.74E-2712109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002494.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-231569IPR009057Homeodomain-like
CDDcd001673.50E-71662No hitNo description
PROSITE profilePS5129420.13963117IPR017930Myb domain
SMARTSM007172.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2370116IPR009057Homeodomain-like
CDDcd001673.56E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSQE EDAILRSFVE RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDNLIL SLYGEIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS  120
TREGKPTSPA PPPTSEDDDS AAAADSQSQD DEEPPPPTPP ALANLEDTDD VVDTGAAIHD  180
DVTLLLKSEQ LYVELMGLIE QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141167107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025537.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-133AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675095.11e-101transcription factor MYB30 isoform X2
SwissprotF4JSU07e-66MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A1E5UPV31e-147A0A1E5UPV3_9POAL; Transcription factor MYB36
STRINGPavir.Ea02676.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-67myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]