PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025545.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 187aa    MW: 20447.7 Da    PI: 7.7227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025545.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-072571347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+ Ed+ +  a  +++ +   +W+++a++++ gRt+ +  +++q +
       Do025545.1 25 PWTKAEDKVFEGALVMFPEHvpnRWALVASRLP-GRTAQEAWDHYQAL 71
                     8*****************99*************.****9988888865 PP
2Myb_DNA-binding46.77.4e-15119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qky
       Do025545.1 119 PWTEEEHRLFLEGLEKYGRGDWRNISRWAVKTRTPTQVASHAQKY 163
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.3052076IPR017930Myb domain
SMARTSM007170.00112274IPR001005SANT/Myb domain
SuperFamilySSF466892.21E-112273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-62472IPR009057Homeodomain-like
PfamPF002496.7E-62570IPR001005SANT/Myb domain
CDDcd001678.49E-52572No hitNo description
PROSITE profilePS5129419.628112168IPR017930Myb domain
SuperFamilySSF466893.38E-18114168IPR009057Homeodomain-like
SMARTSM007177.6E-11116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-17116167IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.8E-12118162IPR009057Homeodomain-like
CDDcd001671.38E-10119164No hitNo description
PfamPF002495.3E-12119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAFYYGASGQ SSSAAAAWGA PSSRPWTKAE DKVFEGALVM FPEHVPNRWA LVASRLPGRT  60
AQEAWDHYQA LLADVDLIES GMVDAPDSWD DDAAAGGGCA GAGRGRGVGS GEERRRGVPW  120
TEEEHRLFLE GLEKYGRGDW RNISRWAVKT RTPTQVASHA QKYFIRQASA ASRGDTKRKS  180
IHDITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-132287772RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714051e-155EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808699.14e-94transcription factor DIVARICATA-like
SwissprotQ8S9H76e-52DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5UZ441e-133A0A1E5UZ44_9POAL; Transcription factor DIVARICATA
STRINGORGLA05G0157700.14e-93(Oryza glaberrima)
STRINGSb09g021770.15e-93(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-46MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]