PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025546.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 248aa    MW: 27161.4 Da    PI: 6.0712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025546.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.6e-3451281127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 l+pGfrF Pt+eel+ +yL++k++g +  ++e+vi+ +d++ ++Pw+Lp ++ ++   +   s +  ++a+g r++r+t sgyWka g+   v++++g+
  Do025546.1   5 LAPGFRFYPTEEELLRFYLRNKLDGVRrGDIERVIPVADVCALDPWELPGTLLST--GIECISLE--REARGGRPSRTTPSGYWKAAGTPGLVYAADGR 99 
                 579*********************9886677789***************655443..33334443..345799************************** PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                  +g+kkt+vfy+grap g kt+W ++ey+
  Do025546.1 100 PIGTKKTMVFYRGRAPAGAKTKWKLNEYK 128
                 ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-384163IPR003441NAC domain
PROSITE profilePS5100539.7985163IPR003441NAC domain
PfamPF023652.1E-167128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAELLAPGFR FYPTEEELLR FYLRNKLDGV RRGDIERVIP VADVCALDPW ELPGTLLSTG  60
IECISLEREA RGGRPSRTTP SGYWKAAGTP GLVYAADGRP IGTKKTMVFY RGRAPAGAKT  120
KWKLNEYKAL EDEDEYAAQA AAPAPTHALQ TRGEFTLCRL YTKSGCPWQF DRRPSAAAAA  180
AGGGSENAAA AVTFPNGEQT GQKRKRAAPP SDDSSSSDGD TQQLLRQRGT NEVLNDDMVD  240
WSQFLDWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25516317165NO APICAL MERISTEM PROTEIN
1ut4_B2e-25516317165NO APICAL MERISTEM PROTEIN
1ut7_A2e-25516317165NO APICAL MERISTEM PROTEIN
1ut7_B2e-25516317165NO APICAL MERISTEM PROTEIN
3swm_A2e-25516320168NAC domain-containing protein 19
3swm_B2e-25516320168NAC domain-containing protein 19
3swm_C2e-25516320168NAC domain-containing protein 19
3swm_D2e-25516320168NAC domain-containing protein 19
3swp_A2e-25516320168NAC domain-containing protein 19
3swp_B2e-25516320168NAC domain-containing protein 19
3swp_C2e-25516320168NAC domain-containing protein 19
3swp_D2e-25516320168NAC domain-containing protein 19
4dul_A2e-25516317165NAC domain-containing protein 19
4dul_B2e-25516317165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936262e-74FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809342.11e-120NAC domain-containing protein 90-like
TrEMBLA0A1E5UZ450.0A0A1E5UZ45_9POAL; NAC domain-containing protein 90
STRINGPavir.J04751.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-52NAC domain containing protein 90