PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do025706.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Trihelix

Protein Properties

Length: 174aa MW: 19865.2 Da PI: 11.6369

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025706.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.1	2.6e-09	83	118	17	52
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCke 52 e r+++ lk+ lWeevs +m++ g+ rs+k+Cke Do025706.1 83 HEGRFQEPGLKGXLWEEVSTRMAAAGYGRSAKRCKE 118 68899999**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MERRERERAT RDEAWRRQEA DKFAREASAR AQSIALPPAA AASGDDMSQD AAAGVGKELV 60 PYDDGDPISR GSLHLSMSRW PKHEGRFQEP GLKGXLWEEV STRMAAAGYG RSAKRCKECA 120 RMPRASAPDR RRTWRRRPPH TGRRCRPVSR PRWRHDVKRR RGLFATYCHA GIGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453128.1	2e-40	trihelix transcription factor GTL1
TrEMBL	A0A1E5URP1	1e-119	A0A1E5URP1_9POAL; Uncharacterized protein
STRING	Sb04g000520.1	7e-40	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	8e-10	Trihelix family protein