PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025854.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 103aa    MW: 11167.7 Da    PI: 10.6914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025854.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-141401355
         AP2 13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                grW+AeIrdp     r +r +lg+f taeeAa+a++aa ++++g
  Do025854.1  1 GRWAAEIRDPQ----RgRRAWLGTFNTAEEAAAAYDAACLCIRG 40
                8********92....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-8140IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15148IPR016177DNA-binding domain
PROSITE profilePS5103218.083148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-21148IPR001471AP2/ERF domain
SMARTSM003802.3E-19154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
GRWAAEIRDP QRGRRAWLGT FNTAEEAAAA YDAACLCIRG PGASINLPPP PSVSDTGPLP  60
PPAASPLPLL PRRCCQHHTY LSGRSSRSRR LSYCRRSSTK TPN
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025854.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636867.12e-19PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotO825032e-18CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5UPP87e-67A0A1E5UPP8_9POAL; Uncharacterized protein (Fragment)
STRINGPOPTR_0010s00900.12e-17(Populus trichocarpa)
STRINGXP_010506788.12e-17(Camelina sativa)
STRINGXP_010518456.11e-17(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-14cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]