PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025868.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YB
Protein Properties Length: 149aa    MW: 16049.5 Da    PI: 8.2851
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025868.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB361.7e-11951472880
       NF-YB  28 skdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 
                 sk+  e v++cv+ef+      a++ c+ +kr t+  ddl+ a+++lGf d v
  Do025868.1  95 SKAPEEAVDQCVAEFVVIGHRVAAQECRPDKRTTVIRDDLVLAMSSLGFSDSV 147
                 5777899**********999*****************************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-798147IPR009072Histone-fold
SuperFamilySSF471138.98E-799145IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLTASSCGWQ IRCTTTRNYV CMVRSCTSVL AYSGSWILVV GVLGSASFLG SKLHGRVAPV  60
PAAETAFPSP LYLGTAPPEL LWRPNFNICR RQPGSKAPEE AVDQCVAEFV VIGHRVAAQE  120
CRPDKRTTVI RDDLVLAMSS LGFSDSVSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VZ441e-105A0A1E5VZ44_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-09nuclear factor Y, subunit B3