PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026013.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 177aa    MW: 18877.4 Da    PI: 10.5804
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026013.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08119162243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
       Do026013.1 119 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 162
                      58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.938141IPR017877Myb-like domain
SMARTSM007171.1E-5117169IPR001005SANT/Myb domain
SuperFamilySSF466895.98E-9119172IPR009057Homeodomain-like
CDDcd001672.65E-7120162No hitNo description
PfamPF002499.4E-7120162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-5120162IPR009057Homeodomain-like
PROSITE profilePS500906.179121162IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLRKAIQKYP KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSTKA FDSFLEKRKP  60
AQSIASPLST RDETVSSSTD GAGTASSKAA AQPASSQTAN GKAAADPVPD SAPSATDPDA  120
WTEAQVLALV QALKAFPKDA SQRWERVAAA VPGKTVVQCK KKVAAMRENF RSKKSGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823394.11e-114dnaJ homolog subfamily C member 2
TrEMBLA0A1E5VXU11e-122A0A1E5VXU1_9POAL; Uncharacterized protein
STRINGPavir.Gb02409.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.18e-52DnaJ domain ;Myb-like DNA-binding domain