PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do026119.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 167aa MW: 18613.7 Da PI: 5.9263

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026119.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.5	7.5e-32	1	94	8	101
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lrr+Ca+dCvlapyfp +qp+++a vh +FG++nv+++l++lp +er +a++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do026119.1 1 LRRRCAPDCVLAPYFPXSQPRRYADVHAVFGTNNVTRVLQSLPVQERGRAADTMGTEARWRMQDPVYGCTGVIDRLQQEIRAVQHELARTRAQL 94 69***************************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.9E-31	1	91	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	20.373	1	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
LRRRCAPDCV LAPYFPXSQP RRYADVHAVF GTNNVTRVLQ SLPVQERGRA ADTMGTEARW 60 RMQDPVYGCT GVIDRLQQEI RAVQHELART RAQLAVHVQG TALLQRTQQP TPLLPPPQPL 120 APAPTVAVHA GAHGVTVHEE EDEEAPLMDP DEFLDLPDNG RTENRNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-27	1	100	18	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-27	1	100	18	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026119.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444738.2	2e-62	LOB domain-containing protein 24
TrEMBL	A0A1E5UP23	1e-117	A0A1E5UP23_9POAL; LOB domain-containing protein 23 (Fragment)
STRING	Pavir.Cb01140.1.p	3e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-33	LOB domain-containing protein 24