PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026228.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 115aa    MW: 12891.8 Da    PI: 4.4721
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026228.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS75.41e-231115142253
        GRAS 142 lRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsP 236
                 ++iT++g p++g   + ++e+tg+rL++fA+++gvpf+f+  ++ ++e++ +++L+++p+E+l+Vn  +   +++d+ + ++s  +rd +L+ ++++ P
  Do026228.1   1 MKITVIGLPQPGfrPAAQIEQTGRRLSDFARKCGVPFKFHS-IVAEWETVCVDDLDIEPDEVLIVNGLFYFGKVMDDGGGIDSpsPRDMLLNNIQKMHP 98 
                 59*********999***************************.6999*******************************999988779************* PP

        GRAS 237 kvvvvveqeadhnsesF 253
                 +v++++ +++++n++ F
  Do026228.1  99 DVFILCIENSSYNAPFF 115
                 ************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.5E-211115IPR005202Transcription factor GRAS
PROSITE profilePS5098517.6541115IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MKITVIGLPQ PGFRPAAQIE QTGRRLSDFA RKCGVPFKFH SIVAEWETVC VDDLDIEPDE  60
VLIVNGLFYF GKVMDDGGGI DSPSPRDMLL NNIQKMHPDV FILCIENSSY NAPFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026228.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450068.29e-57scarecrow-like protein 14
TrEMBLA0A1E5VE666e-80A0A1E5VE66_9POAL; Scarecrow-like protein 34
STRINGPavir.J16280.1.p1e-56(Panicum virgatum)
STRINGSb05g027783.12e-54(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.18e-33GRAS family protein