PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026240.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 260aa    MW: 27432.3 Da    PI: 10.1207
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026240.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.65.1e-1148143497
      DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..aksgkepsfskehdqkifelskkiWg 97 
                  r+wse De+ +L Gl   +a +g+ p     +     ++  +++++ +++ eK+rrL+ K+ + ++            +  ++   +els  iWg
  Do026240.1  48 VRVWSEADEVRILEGLAAHAAAHGAPPGRSQLHAALEGRGLDKAEFTVTEIYEKVRRLRTKYGNLRAAggPPAPAAGGADDGDEVRKYELSAAIWG 143
                 69**********************987774444444457788999******************999984322233334556666778999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-1748143IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSSPPQSPHA AYLVLPAADA AGEKAPRPAP QPRAAAGGGG KRPAVGVVRV WSEADEVRIL  60
EGLAAHAAAH GAPPGRSQLH AALEGRGLDK AEFTVTEIYE KVRRLRTKYG NLRAAGGPPA  120
PAAGGADDGD EVRKYELSAA IWGDQPLNVA KKQGSTSARV VPPPEAGGGG TSTRVRRGFQ  180
ELQGLFPCLA VEVERITSEN DKTVGPVLKR AFGLISDQEA GVLDAKVKKQ RVKEVQARMN  240
QTTLRDEVLK MLIKSMECGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974990.11e-115probable transcription factor At1g61730
TrEMBLA0A1E5VIY70.0A0A1E5VIY7_9POAL; Uncharacterized protein
STRINGPavir.J29943.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199