PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do026258.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 177aa MW: 18366.9 Da PI: 7.7885

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026258.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101	2e-31	59	124	7	72
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++ ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Do026258.1 59 SSADRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEA 124 678********************************************************7776633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.3E-27	59	125	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.47	60	114	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSSSSELVLY NLVPAPQTLN PPPPHAAAAV SGDLSIATGV AAPPEVPLRG RVRRPVGSSS 60 ADRHAKVAGR GRRVRIPAMV AARVFQLTRE LGHRTDGETI EWLLRQAEPS IIAATGTGVT 120 PEEAPSAPVP VSPVAATPSL MPVPYYTALL MQPPPTVNEV TTASASVSGT ATEENNN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026258.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008663070.1	2e-95	transcription factor PCF1
Swissprot	O23875	8e-54	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A1E5VUY0	1e-119	A0A1E5VUY0_9POAL; Transcription factor PCF1
STRING	GRMZM2G096610_P01	6e-95	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-30	TCP family protein