PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026348.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HD-ZIP
Protein Properties Length: 230aa    MW: 25185.1 Da    PI: 10.3511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026348.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-19116170256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++t+ q   Le+ F+ ++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k
  Do026348.1 116 RKKLRLTDAQAAMLENSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 170
                 678899***********************************************98 PP
2HD-ZIP_I/II112.23.3e-36116205190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl++ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d++ L+r++d+l++en+rL+++ ++Lr++
   Do026348.1 116 RKKLRLTDAQAAMLENSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCDRLTDENARLRRDLANLRAS 205
                  69*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.329112172IPR001356Homeobox domain
SMARTSM003896.0E-16114176IPR001356Homeobox domain
SuperFamilySSF466897.94E-19114181IPR009057Homeodomain-like
PfamPF000461.5E-16116170IPR001356Homeobox domain
CDDcd000861.16E-14116173No hitNo description
Gene3DG3DSA:1.10.10.604.5E-18116170IPR009057Homeodomain-like
PRINTSPR000312.0E-6143152IPR000047Helix-turn-helix motif
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6152168IPR000047Helix-turn-helix motif
SMARTSM003403.9E-12172218IPR003106Leucine zipper, homeobox-associated
PfamPF021835.6E-8172204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSSLTTAGSV EEHYSVSVEE FGTHLSLGIG GGSGGWSSRP PRTVQLFGEV LSLQDDGHDG  60
AHHQEHTMAP SASRRKRNHG GSGTAASRQN KKARKSQLGT DYGDHRTPTS DSGGGRKKLR  120
LTDAQAAMLE NSFRAHNILS HAEKQELARR VGLSARQVEV WFQNRRARTK LKQTEVDCDL  180
LRRWCDRLTD ENARLRRDLA NLRASARLAV CASCCDKQVA VVAARAGEMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.15e-97putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX61e-46HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A1E5UWC51e-167A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
STRINGPavir.Aa03244.1.p1e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.14e-31homeobox protein 2