PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026445.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 296aa    MW: 32681.2 Da    PI: 7.6393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026445.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52111401129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 +ppGfrFhP+d+elv +yL ++++g+ +    +i +vd++k+ePwdLp+++  + kewyfF +rd+kyatg+r+nrat sgyWkatgkd++v++   + 
  Do026445.1  11 MPPGFRFHPRDDELVLDYLLHRLSGRAHAG-AAIVDVDLNKCEPWDLPEAAGVGGKEWYFFNQRDRKYATGHRTNRATVSGYWKATGKDRAVVAGgdDA 108
                 79*************************887.78***************8888899**************************************986666 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                 ++vg++ktLvfy+grapkg+kt+Wvmhe+rle
  Do026445.1 109 AVVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 140
                 77***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-582175IPR003441NAC domain
PROSITE profilePS5100556.3811175IPR003441NAC domain
PfamPF023657.8E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSISMVEAR MPPGFRFHPR DDELVLDYLL HRLSGRAHAG AAIVDVDLNK CEPWDLPEAA  60
GVGGKEWYFF NQRDRKYATG HRTNRATVSG YWKATGKDRA VVAGGDDAAV VGMRKTLVFY  120
RGRAPKGRKT EWVMHEFRLE PPAPPPPPQH HLPAPATARH QRLKEDWVLC RVFYKSRTTT  180
PKLPSEDAHD GTPSTELDLP AALPLAPLVD TYTAFGAAPT VTEQVSCFSG LPALPFKRPV  240
SFGDLLAFDT SEKVSIGTVM LSSMSSNSSS SVLELPPNCN WNQENVLSQM WDPLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-46618215174NAC domain-containing protein 19
3swm_B4e-46618215174NAC domain-containing protein 19
3swm_C4e-46618215174NAC domain-containing protein 19
3swm_D4e-46618215174NAC domain-containing protein 19
3swp_A4e-46618215174NAC domain-containing protein 19
3swp_B4e-46618215174NAC domain-containing protein 19
3swp_C4e-46618215174NAC domain-containing protein 19
3swp_D4e-46618215174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026445.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581281e-127EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822017.11e-175NAC domain-containing protein 21/22-like
SwissprotQ84TE66e-80NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1E5UN160.0A0A1E5UN16_9POAL; NAC domain-containing protein 21/22
STRINGSi014180m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-73NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]