PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026485.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 256aa    MW: 28651.8 Da    PI: 10.0736
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026485.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.4e-1119108394
                 EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 kvl+ps+++++  l +p kf++++  +++ +s   +l ++  +  ++ +  + + g +++++GW++F  ++g+ e D+++++++g++ f+++v
  Do026485.1  19 KVLLPSSTSRK--LGIPPKFVQKNiAESEMKSSVAVLLSPLYNFCRIVVEKDES-GNMFFSGGWSQFLVSHGITEFDVLLLRYEGNMVFTMKV 108
                 77766666554..9**********966667788999999999999999943433.3478999*************************995554 PP
2B352.11.2e-161722551799
                 E--HHH.HTT---..--SEEEEEETTS...-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeehggkkeesktltledesg...rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++  +f++++g++k+ s ++tl+++s    r+W+v++ + + +s++  lt+GW++F+ +n +kegD+++F  ++  ++  +v + r+
  Do026485.1 172 TVAGTFCKAIGLQKRAS-EITLRTTSAhgtRTWQVRFLVyKYRSRTGQLTRGWRGFCVDNAIKEGDVCTFNIVE--TTLWHVEIMRR 255
                 67789*****9998765.888887666669*******66355555588***********************655..33356776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.51515112IPR003340B3 DNA binding domain
SMARTSM010198.7E-717112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-1517114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-1518114IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-919108IPR003340B3 DNA binding domain
CDDcd100171.33E-1119109No hitNo description
Gene3DG3DSA:2.40.330.101.8E-16150255IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.9E-7168256IPR003340B3 DNA binding domain
PfamPF023622.0E-13173254IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-13173255IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-12177240No hitNo description
PROSITE profilePS5086311.589189256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGSSSGNHGA RASIARHLKV LLPSSTSRKL GIPPKFVQKN IAESEMKSSV AVLLSPLYNF  60
CRIVVEKDES GNMFFSGGWS QFLVSHGITE FDVLLLRYEG NMVFTMKVFG PDGCQKGFKD  120
QDTSSKELDR TSFGDIKTLE DEEDPASSSS KRKSMAKKPD VSAHVHHFLL KTVAGTFCKA  180
IGLQKRASEI TLRTTSAHGT RTWQVRFLVY KYRSRTGQLT RGWRGFCVDN AIKEGDVCTF  240
NIVETTLWHV EIMRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.12e-87putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5V9D70.0A0A1E5V9D7_9POAL; Putative B3 domain-containing protein
STRINGPavir.Ga02236.1.p2e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-13B3 family protein