PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026510.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 583aa    MW: 63758.3 Da    PI: 10.3579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026510.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.9e-17103191197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ffk++ p    +  rl +p +f ++ ++++++   ++l+ +sg++W+  l  +  s++ +++ GWkeFv ++ +k+g f+vF++dg s+f   v+vf
  Do026510.1 103 FFKIFFP--GQSAERLKIPASFHQHLMEQSAG--LVSLKGPSGNTWQAVL--TSDSEGLWFGHGWKEFVMDHSVKQGHFLVFTYDGPSQF--SVTVF 191
                 6666644..445567*******9655766555..7***************..*********************************99999..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2299193IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.915101194IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-20102192IPR015300DNA-binding pseudobarrel domain
CDDcd100172.46E-18103191No hitNo description
SMARTSM010191.4E-16103194IPR003340B3 DNA binding domain
PfamPF023628.2E-15104190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MAAGRKKQQG SNRAAATPPE KESGKGKGNE KSARGDGKEL AREKQRRRGE EKEVREEVQE  60
PAKEKQKQKG KGKGDKEVRE DGREKEKQQG KEEPAAKSVG QQFFKIFFPG QSAERLKIPA  120
SFHQHLMEQS AGLVSLKGPS GNTWQAVLTS DSEGLWFGHG WKEFVMDHSV KQGHFLVFTY  180
DGPSQFSVTV FGPLGTVDPL ALVAKPSNDI VIKIEDDEEL QGDMDAGGTS EPSVLPPEEG  240
NGITRKRARG VNDVSADGNA PKRHSSVTNK VLPPEEGNGK RPRVNDYISA DGNGSKKHSS  300
VAKKTEKKIP EANAGTSKDA STIVNTDKDG NASKRYSSVT KKAEKKIPES NAGTSKDAST  360
IVNTGKDGNA SKRNSSVTKK AEKKIPEANA GTSKDGSTIV NTDKDGNASK RNSNVTKKAE  420
KKIPEANAGT SKDASTIVNT DEDDNASKRN SNVTKKAEKK IPEANASTSK DASTIVNTNK  480
DAPFSLLDES MSFNKTLVRE KNMPKLGKFL VRRARQPMVI SQRRAVTQEE KDHALRRAKE  540
FKSKNPFAVQ TMMESYVYVG FFMVRSLYSH MLLNLYRTQN YSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.11e-117B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.11e-117B3 domain-containing protein Os11g0197600-like
TrEMBLA0A1E5V7U10.0A0A1E5V7U1_9POAL; B3 domain-containing protein
STRINGPavir.Ha01581.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-15B3 family protein