PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026572.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 230aa    MW: 24289.6 Da    PI: 8.7728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026572.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14e-221865249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                rie++  rqv fskRr+g++KKA+ELS+LC+a+va ++fs+ gk + +
  Do026572.1 18 RIESDEARQVCFSKRRAGLFKKASELSILCGADVAAVVFSPAGKAFSF 65
                8******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.01E-29981IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-35968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.717969IPR002100Transcription factor, MADS-box
CDDcd002651.75E-411085No hitNo description
PRINTSPR004043.1E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAPPRRPSMG RQKIEIRRIE SDEARQVCFS KRRAGLFKKA SELSILCGAD VAAVVFSPAG  60
KAFSFGHPSV ESILDRFLDT TSPGAGAGGL SSVGDRAVSE LNRHYGELRA QLDAEKTRQE  120
RADETIRKER AARSPAMAWI DADLGAMGHD DLVAFWGALI GVQATVAASA DQLLRDALLL  180
GRRGRQPAQL AGGAAFDVGA FGLAMQPPPG FAGVDLQGFG GQATILGPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17983175MEF2C
5f28_B8e-17983175MEF2C
5f28_C8e-17983175MEF2C
5f28_D8e-17983175MEF2C
6byy_A9e-17983175MEF2 CHIMERA
6byy_B9e-17983175MEF2 CHIMERA
6byy_C9e-17983175MEF2 CHIMERA
6byy_D9e-17983175MEF2 CHIMERA
6bz1_A1e-16983175MEF2 CHIMERA
6bz1_B1e-16983175MEF2 CHIMERA
6bz1_C1e-16983175MEF2 CHIMERA
6bz1_D1e-16983175MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626541e-94EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806827.11e-143agamous-like MADS-box protein AGL29
TrEMBLA0A1E5VA381e-162A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61
STRINGPavir.J11717.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-34AGAMOUS-like 61