PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do026600.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NF-YB

Protein Properties

Length: 119aa MW: 12768.6 Da PI: 10.4434

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026600.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	54.7	2.5e-17	56	118	8	70
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwa 70 l + n+ +m++v+P++ is ak+++++c+++ +++v++eas+++++++r+t++++d+ + Do026600.1 56 LQMPNIECLMRQVIPKDVTISSRAKQLTHDCAVKLVGLVADEASEQARAQHRRTVKPEDIKSS 118 6789*******************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-12	9	117	IPR009072	Histone-fold
Pfam	PF00808	1.9E-11	55	118	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	6.2E-11	56	118	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MAKDSPQKSQ DIETMGRKPK RGARKKKGGR RNGEKQVAPA GCASSDGEGG SACAGLQMPN 60 IECLMRQVIP KDVTISSRAK QLTHDCAVKL VGLVADEASE QARAQHRRTV KPEDIKSSL

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	2e-40	nuclear transcription factor Y subunit B-1-like
Swissprot	Q6Z348	1e-21	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A1E5USS8	3e-80	A0A1E5USS8_9POAL; Uncharacterized protein
STRING	Pavir.Aa00694.1.p	9e-30	(Panicum virgatum)
STRING	Si018339m	4e-29	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-11	nuclear factor Y, subunit B4